WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00303367 Gene Name  Y49F6A.12
Sequence Name  ? Y49F6A.12 Organism  Caenorhabditis elegans
Biotype  SO:0001217 Genetic Position  II:±
Length (nt)  ? 201
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00303367

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y49F6A.12.1 Y49F6A.12.1 153   II: 3595639-3595839
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49F6A.12 Y49F6A.12 153   II: 3595639-3595712

0 RNAi Result

13 Allele

Public Name
gk964317
gk963801
gk963053
gk964038
WBVar02120933
WBVar02121723
WBVar02121132
gk962594
gk963721
WBVar01236946
WBVar01236947
WBVar01948805
WBVar00220620

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00303367 3595639 3595839 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3595840..3596225   386 II: 3595840-3596225 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in sma-3(wk30) comparing to in N2. EdgeR fold change > 2, FDR < 0.05. WBPaper00067781:sma-3(wk30)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00303367 3595639 3595839 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
201

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3595282..3595638   357 II: 3595282-3595638 Caenorhabditis elegans