WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00303368 Gene Name  Y49F6B.19
Sequence Name  ? Y49F6B.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 1795
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00303368

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y49F6B.19.1 Y49F6B.19.1 321   II: 3510546-3512340
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49F6B.19 Y49F6B.19 321   II: 3510546-3510668

1 RNAi Result

WormBase ID
WBRNAi00020791

46 Allele

Public Name
gk964317
gk963801
gk963053
WBVar01368017
WBVar01537610
WBVar01368016
gk514449
gk722040
WBVar01437042
WBVar01437043
WBVar01437041
WBVar01437044
WBVar01719255
WBVar01719254
WBVar01719256
WBVar01504535
WBVar01504534
gk138587
WBVar01665895
WBVar02103003
WBVar01626153
WBVar01626155
WBVar01626154
gk469659
gk606229
gk486640
gk390476
gk504159
gk637138
gk487376

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00303368 3510546 3512340 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Proteins detected in gonad from single-worm studies. N.A. WBPaper00066880:gonad_expressed
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00303368 3510546 3512340 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1795

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3512341..3512689   349 II: 3512341-3512689 Caenorhabditis elegans