WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00303369 Gene Name  Y49F6B.20
Sequence Name  ? Y49F6B.20 Organism  Caenorhabditis elegans
Automated Description  Is affected by nhr-8 and rotr-1 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 593
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00303369

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y49F6B.20.1 Y49F6B.20.1 551   II: 3470057-3470649
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49F6B.20 Y49F6B.20 462   II: 3470138-3470394

1 RNAi Result

WormBase ID
WBRNAi00020795

16 Allele

Public Name
gk964317
gk963801
gk963053
WBVar02122535
WBVar02035670
WBVar01236642
WBVar01236643
WBVar01626124
WBVar01626125
gk418731
gk492537
gk836830
gk418732
WBVar01791143
WBVar00169403
WBVar00169404

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00303369 3470057 3470649 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3464681..3470056   5376 II: 3464681-3470056 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_18
  Proteins identified in extracellular vesicle. N.A. WBPaper00062669:extracellular-vesicle_protein
  Transcripts that showed significantly decreased expression in ceh-37(ok642) comparing to in N2 Fold change > 2, FDR < 0.05 WBPaper00067667:ceh-37(ok642)_downregulated
  Transcripts that showed significantly decreased expression in nhr-8(hd117) comparing to in N2. Differentially expressed genes were identified using Sleuth (version 0.30.0). WBPaper00062446:nhr-8(hd117)_downregulated
  Transcripts that showed significantly decreased expression in rotr-1(ums53) comparing to in N2 animals. Differentially expressed genes were identified using Sleuth (version 0.30.0). WBPaper00067263:rotr-1(ums53)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00303369 3470057 3470649 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
593

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3470650..3471238   589 II: 3470650-3471238 Caenorhabditis elegans