WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305092 Gene Name  C16C8.25
Sequence Name  ? C16C8.25 Organism  Caenorhabditis elegans
Biotype  SO:0001217 Genetic Position  II:±
Length (nt)  ? 637
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305092

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C16C8.25.1 C16C8.25.1 498   II: 3449230-3449866
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16C8.25 C16C8.25 498   II: 3449230-3449310

3 RNAi Result

WormBase ID
WBRNAi00007324
WBRNAi00010853
WBRNAi00082385

25 Allele

Public Name
gk964317
gk963801
gk963053
WBVar02124391
WBVar02122099
WBVar02121845
WBVar02122434
WBVar02120930
ok2301
WBVar01695338
WBVar01934269
gk138476
gk138475
gk138477
gk138478
WBVar01302747
WBVar01302746
gk451342
WBVar01537535
gk669841
gk925247
gk419970
WBVar00169374
gk352770
gk599643

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00305092 3449230 3449866 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in N2 comparing to in skn-1 gain of function allele lax188 animals DESeq2, fold change > 2, FDR < 0.05. WBPaper00067765:skn-1(lax188)_downregulated_N2
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00305092 3449230 3449866 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
637

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region