WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023282 Gene Name  F39E9.9
Sequence Name  ? F39E9.9 Organism  Caenorhabditis elegans
Automated Description  Enriched in ADLL; AQR; and PQR based on single-cell RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1048
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023282

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

77 Allele

Public Name
gk964317
gk963801
gk963053
WBVar02122302
WBVar02120456
WBVar02123019
WBVar02122780
WBVar02122532
WBVar02124390
WBVar02122098
WBVar02122355
WBVar02124673
WBVar02124872
WBVar02120786
WBVar02120617
WBVar02121131
WBVar02123186
WBVar02123659
WBVar02121370
WBVar02122914
WBVar02122218
WBVar02121721
gk964209
gk964210
WBVar02124763
WBVar02121950
WBVar02120928
WBVar02121546
WBVar02075123
ttTi4613

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023282 3294021 3295068 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3295069..3295404   336 II: 3295069-3295404 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Single-cell RNA-Seq cell group 81_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:81_0
  Transcripts enriched in PQR according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:PQR_enriched
  Single-cell RNA-Seq cell group 39_2 expressed in neuron. scVI 0.6.0 WBPaper00065841:39_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023282 3294021 3295068 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1048

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3293473..3294020   548 II: 3293473-3294020 Caenorhabditis elegans