WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023480 Gene Name  srz-68
Sequence Name  ? C17F4.9 Organism  Caenorhabditis elegans
Automated Description  Enriched in ADL and ADLL based on single-cell RNA-seq studies. Is affected by etr-1 and lin-52 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  II :-7.40377 ±0.044909 Length (nt)  ? 1875
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023480

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

97 Allele

Public Name
gk964317
gk963801
gk963053
WBVar02122302
WBVar02120456
WBVar02123019
WBVar02122780
WBVar00091191
WBVar02122532
WBVar02124390
WBVar02122098
WBVar02122355
WBVar02124673
WBVar02124872
WBVar02121545
WBVar02120786
WBVar02120617
WBVar02121131
WBVar02123186
WBVar02123659
WBVar02121370
WBVar02122914
WBVar02122218
WBVar02121721
gk964209
gk964210
WBVar02124763
WBVar02121950
WBVar02120928
WBVar01693895

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00023480 3238169 3240043 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in Q cell. DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. WBPaper00066652:Q-cell_depleted
  Transcripts that showed significantly decreased expression in sma-3(wk30) comparing to in N2. EdgeR fold change > 2, FDR < 0.05. WBPaper00067781:sma-3(wk30)_downregulated
  Transcripts that showed significantly decreased expression in lin-52(n771) comparing to in N2 animals at L1 larva stage. DESeq2 WBPaper00065149:lin-52(n771)_downregulated
  Single-cell RNA-Seq cell group 81_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:81_0
  Transcripts enriched in ADL according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:ADL_enriched
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00023480 3238169 3240043 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1875

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3240044..3240506   463 II: 3240044-3240506 Caenorhabditis elegans