WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305104 Gene Name  C46F9.6
Sequence Name  ? C46F9.6 Organism  Caenorhabditis elegans
Automated Description  Is predicted to encode a protein with the following domains: MATH/TRAF domain and MATH domain. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 713
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305104

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C46F9.6.1 C46F9.6.1 665   II: 1898236-1898948
Transcript:C46F9.6.2 C46F9.6.2 597   II: 1898236-1898928
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46F9.6 C46F9.6 264   II: 1898242-1898354

0 RNAi Result

42 Allele

Public Name
WBVar02124326
WBVar02123182
WBVar02121537
gk964317
gk963801
WBVar02122524
WBVar02120604
WBVar02121124
WBVar02124543
WBVar02120776
WBVar02121946
WBVar02122773
WBVar02123007
WBVar02122097
WBVar02122433
WBVar02079806
WBVar00091181
WBVar00091057
WBVar02079843
WBVar02077026
WBVar02079710
WBVar02079709
WBVar01412761
WBVar02079707
WBVar02075086
gk134873
gk134872
gk134871
gk134870
gk134869

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305104 1898236 1898948 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1898949..1900233   1285 II: 1898949-1900233 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in N2 comparing to in skn-1 gain of function allele lax188 animals DESeq2, fold change > 2, FDR < 0.05. WBPaper00067765:skn-1(lax188)_upregulated_N2
  Transcripts that showed significantly increased expression in fic-1(n5823);hsp-3(RNAi) comparing to fic-1(n5823) animals with control vector. edgeR (v3.19, Bioconductor), p < 0.05, log2FC > 1.5 or < -1.5 WBPaper00068266:hsp-3(RNAi)_upregulated_fic-1(n5823)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305104 1898236 1898948 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
713

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1897759..1898235   477 II: 1897759-1898235 Caenorhabditis elegans