WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305102 Gene Name  C46F9.5
Sequence Name  ? C46F9.5 Organism  Caenorhabditis elegans
Automated Description  Is affected by cyd-1 based on RNA-seq studies. Is affected by Tamoxifen based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 222
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305102

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C46F9.5.1 C46F9.5.1 180   II: 1895578-1895799
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46F9.5 C46F9.5 180   II: 1895578-1895649

0 RNAi Result

29 Allele

Public Name
WBVar02124326
WBVar02123182
WBVar02121537
gk964317
gk963801
WBVar02122524
WBVar02120604
WBVar02121124
WBVar02124543
WBVar02120776
WBVar02121946
WBVar02122773
WBVar02123007
WBVar02122097
WBVar02122433
WBVar02079806
WBVar00091181
WBVar00091057
WBVar02079843
WBVar02077026
WBVar02079710
WBVar02079709
WBVar01412761
WBVar02079707
WBVar02075086
gk134862
WBVar01717806
WBVar02079708
gk683808

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305102 1895578 1895799 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1895800..1896061   262 II: 1895800-1896061 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in N2 day 7 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day7_vs_Day1_upregulated_Illumina
  Transcripts that showed significantly decreased expression in gonad cyd-1(RNAi) animals in daf-2(e1370) at late L4 stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00067493:gonad-cyd-1(RNAi)_downregulated_daf-2(e1370)
  Transcripts that showed significantly increased expression in N2 day 10 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day10_vs_Day1_upregulated_Illumina
  Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage. DEseq2, fold change > 2 WBPaper00064505:tamoxifen_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305102 1895578 1895799 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
222

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1894439..1895577   1139 II: 1894439-1895577 Caenorhabditis elegans