WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305103 Gene Name  C16C4.19
Sequence Name  ? C16C4.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by dve-1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  II:± Length (nt)  ? 463
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Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305103

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C16C4.19 C16C4.19 348   II: 1892105-1892567
 

Other

0 CDSs

6 RNAi Result

WormBase ID
WBRNAi00040703
WBRNAi00010840
WBRNAi00023054
WBRNAi00023144
WBRNAi00023656
WBRNAi00023944

51 Allele

Public Name
WBVar02124326
WBVar02123182
WBVar02121537
gk964317
gk963801
WBVar02122524
WBVar02120604
WBVar02121124
WBVar02124543
WBVar02120776
WBVar02121946
WBVar02122773
WBVar02123007
WBVar02122097
WBVar02122433
WBVar02079806
WBVar00091181
WBVar00091057
WBVar02079843
WBVar02077026
WBVar02079710
WBVar02079709
WBVar01412761
WBVar02079707
WBVar02075086
WBVar01717775
WBVar01717776
WBVar01717777
WBVar01717778
WBVar01763419

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305103 1892105 1892567 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1891700..1892104   405 II: 1891700-1892104 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in eat-2(ad465);dve-1(RNAi) animals comparing to eat-2(ad465) animals injected with empty vector. fold change > 2, FDR < 0.01 WBPaper00067391:dve-1(RNAi)_upregulated_eat-2(ad465)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305103 1892105 1892567 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
463

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1892568..1894211   1644 II: 1892568-1894211 Caenorhabditis elegans