WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219321 Gene Name  T07H3.10
Sequence Name  ? T07H3.10 Organism  Caenorhabditis elegans
Automated Description  Enriched in hypodermis based on RNA-seq studies. Is affected by adsorbable organic bromine compound based on microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1822
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219321

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

132 Allele

Public Name
WBVar02124326
WBVar02123182
WBVar02121537
WBVar02123791
WBVar00091177
gk964317
gk963801
WBVar02122524
WBVar02120604
WBVar02121124
WBVar02124543
WBVar02120776
WBVar02121946
tm12066
WBVar02071575
WBVar01716631
WBVar01716630
WBVar01716633
WBVar01716632
WBVar01891429
WBVar01891430
WBVar01716623
WBVar01716622
WBVar00545119
WBVar01716625
WBVar01682986
WBVar00545120
WBVar01716624
WBVar00545121
WBVar01716627

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219321 1580781 1582602 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1579987..1580780   794 II: 1579987-1580780 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging. Cufflinks FPKM value >=1. WBPaper00050990:hypodermis_expressed
  Transcripts uniquely expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging. Cufflinks FPKM value >=1. WBPaper00050990:hypodermis_enriched
  Genes that showed significantly increased expression after exposure to adsorbable organic bromine compounds (AOBr) contained in M. aeruginosa batch culture. Differentially expressed genes (DEGs) were identified with a random variance t-test and a significance analysis of microarrays (SAM) test. Genes were considered statistically significant if their p-value was less than 0.05, the false discovery rate less than 0.3, and the fold change compared to control at least <= 0.67 or >=1.5. WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr1156399 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219321 1580781 1582602 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1822

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1582603..1582875   273 II: 1582603-1582875 Caenorhabditis elegans