WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023287 Gene Name  F46F5.3
Sequence Name  ? F46F5.3 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position  :±
Length (nt)  ? 966
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023287

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

26 Allele

Public Name
gk964317
gk963801
gk132383
gk132381
gk132382
gk132380
WBVar01933113
gk870170
gk919590
gk694598
gk825221
gk812835
gk745255
gk462634
gk391617
WBVar01831255
WBVar01623354
WBVar01399549
WBVar01682352
WBVar01682354
WBVar01682353
WBVar01292867
WBVar01292866
WBVar01532963
WBVar01292865
WBVar01574634

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023287 801728 802693 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_801523..801727   205 II: 801523-801727 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in natural variant RC301(that showed resistance towards bacteria infection) vs. natural variant DA650, after 4 hour of infection by P. aeruginosa PA14. Fold change > 2, p-value < 0.05. WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
  Transcripts that showed significantly decreased expression after animals were exposed to 500 uM of 3-dihydro-2-phenyl-sulfanylenebenzo[d] [1,3,2]-oxazaphosphole (FW1256) from L1 stage larvae onwards. The DESeq2 package (v1.24.0) was used to identify differentially expressed genes (DEGs). Fold change > 2, FDR < 0.05. WBPaper00061040:FW1256_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023287 801728 802693 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
966

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_802694..803308   615 II: 802694-803308 Caenorhabditis elegans