WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199511 Gene Name  Y54E5B.6
Sequence Name  ? Y54E5B.6 Organism  Caenorhabditis elegans
Automated Description  Enriched in AFD based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 145
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199511

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54E5B.6 Y54E5B.6 145   I: 14806329-14806473
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk963849
gk964175
gk962681
gk963947
gk963269
gk964059
gk963714
gk963713
gk445320
WBVar02052751
WBVar02072262

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199511 14806329 14806473 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_14798706..14806328   7623 I: 14798706-14806328 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in AFD neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis. Fold change >= 4. WBPaper00050344:AFD-neuron_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199511 14806329 14806473 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
145

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_14806474..14807461   988 I: 14806474-14807461 Caenorhabditis elegans