WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219231 Gene Name  mir-5545
Sequence Name  ? Y47H9C.21 Organism  Caenorhabditis elegans
Automated Description  Is affected by alg-5 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  I :12.8985± Length (nt)  ? 110
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Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219231

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47H9C.21a Y47H9C.21a 24   I: 11885615-11885638
Transcript:Y47H9C.21b Y47H9C.21b 23   I: 11885660-11885682
 

Other

0 CDSs

6 RNAi Result

WormBase ID
WBRNAi00106342
WBRNAi00037210
WBRNAi00108398
WBRNAi00108379
WBRNAi00108375
WBRNAi00108378

8 Allele

Public Name
gk962706
gk963849
gk962859
gk964175
gk963906
gk963788
WBVar01713554
WBVar01285820

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219231 11885596 11885705 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_downregulated_miRNA
  MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(tm1163)_downregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219231 11885596 11885705 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
110

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region