WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219788 Gene Name  B0379.13
Sequence Name  ? B0379.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by lpd-3 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 89
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219788

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0379.13 B0379.13 89   I: 10103538-10103626
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk962858
gk962706
gk963902
gk963849

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219788 10103538 10103626 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_10103627..10107348   3722 I: 10103627-10107348 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219788 10103538 10103626 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
89

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_10103354..10103537   184 I: 10103354-10103537 Caenorhabditis elegans