|
|
Transcripts that showed significantly increased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. |
Fold change > 2, FDR < 0.01. |
WBPaper00065993:glp-1(e2141)_upregulated
|
|
|
Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. |
DESeq2, fold change > 2, FDR < 0.05. |
WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
|
|
|
Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. |
DESEQ2, fold change > 2 and FDR < 0.01. |
WBPaper00062103:neuron_enriched
|
|
|
Transcripts expressed in vulva. |
FPKM >= 1. |
WBPaper00064122:vulva_transcriptome
|
|
|
Transcripts that showed significantly increased expression in exos-8(RNAi) animals. |
fold change > 2, FDR < 0.05 |
WBPaper00068292:exos-8(RNAi)_upregulated
|
|
|
Transcripts that showed significantly increased expression at the intestine cells of daf-2(e1370) comparing to the intestine cells of N2 animals at L2 larva stage. |
DESeq2 (version 1.24.0), fold change >= 2, FDR < 0.05 |
WBPaper00064632:daf-2(e1370)_upregulated_intestine
|
|
|
Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. |
Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. |
WBPaper00053810:daf-2(e1370)_upregulated
|
|
|
Transcripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals. |
Salmon was used to map the mRNA-seq reads with the worm database WS268, and its output files were imported to DESeq2 in R. The differentially expressed genes were filtered by fold change more than 2 and adjusted p-value < 0.05. The scatter plots were generated by the plot function in R. |
WBPaper00061479:hda-1(ne4752)_upregulated
|
|
|
Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. |
Student's t-test, fold change > 2, p-value < 0.05. |
WBPaper00055386:daf-2(e1370)_upregulated
|
|
|
Transcipts that showed significantly increased expression in old (days 24, 14, and 9 of adulthood) octr-1(ok371) comparing to in N2 at 25C. |
DESeq2 v1.31.16, fold change > 2, FDR < 0.05 |
WBPaper00068082:octr-1(ok371)_upregulated_old_25C
|
|
|
Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals. |
DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. |
WBPaper00060014:set-2(tm1630)_upregulated
|
|
|
Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. |
DESeq2, FDR < 0.05, fold change > 2. |
WBPaper00066978:daf-2(e1370)_upregulated_neuron
|
|
|
Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. |
DESeq2, FDR < 0.05, fold change > 2. |
WBPaper00066978:daf-16(mu86)_upregulated_neuron
|
|
|
Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. |
DESeq2, FDR < 0.05, fold change > 2. |
WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
|
|
|
siRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine). |
DESeq2 v1.13.8, fold change > 2, FDR < 0.01. |
WBPaper00056161:male_enriched_siRNA
|
|
|
Single-cell RNA-Seq cell group 40_0 expressed in endocrine. |
scVI 0.6.0 |
WBPaper00065841:40_0
|
|
|
Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. |
Fold change > 2, p-value < 0.05. |
WBPaper00060661:sensory-neuron_enriched
|
|
|
Transcripts that interact with endogenous EGL-43-GFP at L3 larva stage according to CHIP-Seq analysis. |
N.A. |
WBPaper00059471:EGL-43_interacting
|
|
|
Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. |
Limma version 3.24.15. Fold change < 0.67 (p < 0.05). |
WBPaper00055827:daf-2(e1370)_upregulated
|
|
|
Genes that showed significantly decreased expression in hrp-2(RNAi) animals comparing to in control animals. |
DESeq2, adjusted p-value < 0.1, log2 Fold change >= 2 or <= -2. |
WBPaper00050504:hrp-2(RNAi)_downregulated
|
|
|
Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. |
DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. |
WBPaper00055226:adr-1(tm668)_downregulated
|
|
|
Transcripts that showed significantly increased expression in spr-5(by101) L1 animals comparing to in N2 control. |
DeSeq2 (v.2.11.40.2), p < 0.05. |
WBPaper00060886:spr-5(by101)_upregulated
|
