WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220127 Gene Name  W10D5.5
Sequence Name  ? W10D5.5 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 98
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220127

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W10D5.5 W10D5.5 98   I: 9106600-9106697
 

Other

0 CDSs

5 RNAi Result

WormBase ID
WBRNAi00107531
WBRNAi00036429
WBRNAi00024292
WBRNAi00107433
WBRNAi00107317

6 Allele

Public Name
gk962858
gk962706
gk963902
gk963849
gk964316
gk386317

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00220127 9106600 9106697 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
Bacteria diet: OP50PQE va OP50 Transcripts that showed significantly decreased expression in worms fed OP50PQE, a paraquat-evolved OP50 strain (authors evolved OP50 for roughly 500 generations in the presence of 2.5 mM paraquat), comparing to worms fed with OP50. DESeq2, fold change > 2, p-value < 0.05 WBPaper00066675:OP50PQE_vs_OP50_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00220127 9106600 9106697 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
98

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region