Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:D1081.20.1 | D1081.20.1 |
522
 |
I: 8482759-8484414 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:D1081.20 | D1081.20 |
486
|
I: 8482795-8483040 |
23 Allele
| Public Name |
|---|
| gk962858 |
| gk962706 |
| gk963902 |
| gk963849 |
| gk964316 |
| WBVar00537983 |
| ttTi35091 |
| gk764733 |
| gk758401 |
| gk504108 |
| gk751166 |
| gk441966 |
| gk429319 |
| gk419946 |
| gk617036 |
| gk712053 |
| gk434065 |
| gk401535 |
| WBVar01909972 |
| gk116978 |
| gk116979 |
| gk116980 |
| gk116981 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00304985 | 8482759 | 8484414 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_8482539..8482758 | 220 | I: 8482539-8482758 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Germline-intrinsic transcripts. | Comparisons were made between genotypes by subtracting the mean log value of one ratio from another, and the significance of the difference was evaluated using Student t-test for two populations. For the fem-3(gf) versus fem-1(lf) direct comparison, authors performed the same analysis, except they used a Students t-test for one population. Author chose a combination of a twofold difference with a t value exceeding 99% confidence (P < 0.01), because these criteria allowed the inclusion of essentially all genes that had previously been identified as germline-enriched in a wt/glp-4 hermaphrodite comparison. Additionally, requiring a twofold difference reduced false positives, as the number of genes with two-fold difference and a P<0.01 only included ~100 genes more than with P < 0.001, and almost all genes showed germline expression by in situ hybridization. | [cgc6390]:intrinsic | |
| Germline-enriched and sex-biased expression profile cluster E. | hierarchical clustering | [cgc6390]:Cluster_E | |
| Genome-wide analysis of developmental and sex-regulated gene expression profile. | self-organizing map | cgc4489_group_2 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_8484415..8484595 | 181 | I: 8484415-8484595 | Caenorhabditis elegans |
