WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219863 Gene Name  C54G4.16
Sequence Name  ? C54G4.16 Organism  Caenorhabditis elegans
Biotype  SO:0001267 Genetic Position  :±
Length (nt)  ? 160
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219863

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C54G4.16 C54G4.16 160   I: 8010207-8010366
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk962858
gk962706
gk963902
gk963849
gk964316
gk962622
tm10583
tm11907
gk779492

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219863 8010207 8010366 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_8009117..8010206   1090 I: 8009117-8010206 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219863 8010207 8010366 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
160

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_8010367..8014405   4039 I: 8010367-8014405 Caenorhabditis elegans