Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:H27M09.7 | H27M09.7 |
175
 |
I: 6847134-6847308 |
Other
9 Allele
| Public Name |
|---|
| gk962858 |
| gk962706 |
| gk963902 |
| gk964180 |
| gk964179 |
| WBVar01909719 |
| gk867149 |
| gk630414 |
| h13874 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00201494 | 6847134 | 6847308 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_6847309..6847510 | 202 | I: 6847309-6847510 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Bacteria: B.thuringiensis | Transcripts in N2 animals that were significantly differentially expressed at least for one time point and one pathogenic strain Bt247 and Bt679 compared to the non pathogenic strain Bt407. | Cuffdiff | WBPaper00060358:B.thuringiensis_pathogen_regulated_N2 |
| Fungi infection: Fusarium oxysporum | Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. | The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. | WBPaper00053368:F.oxysporum_regulated |
| Genes that showed significantly increased expression level in rsr-2(RNAi) animals comparing to in gfp(RNAi) control, according to RNAseq analysis. | This analysis uses Cufflinks-Cuffdiff to quantify and identify transcripts with a significant level of expression between different conditions. | WBPaper00042477:rsr-2(RNAi)_upregulated_RNAseq |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_6846960..6847133 | 174 | I: 6846960-6847133 | Caenorhabditis elegans |
