WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235197 Gene Name  rrn-4.16
Sequence Name  ? T09B4.23 Brief Description  rrn-4.16 (T09B4.23) encodes a 5s ribosomal RNA (rRNA), a component of the large ribosomal subunit and synthesised by RNA polymerase III; As this forms a major component of the ribosome, it is essential for all protein synthesis in the cell.
Organism  Caenorhabditis elegans Automated Description  Is affected by ogt-1 based on RNA-seq studies.
Biotype  SO:0001637 Genetic Position  I :0.858966±
Length (nt)  ? 112
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SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235197

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T09B4.23 T09B4.23 112   I: 6169084-6169195
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00004180
WBRNAi00076666
WBRNAi00103520

4 Allele

Public Name
gk962858
gk962706
gk963902
gk964505

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00235197 6169084 6169195 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_6169196..6171594   2399 I: 6169196-6171594 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00235197 6169084 6169195 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
112

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_6168643..6169083   441 I: 6168643-6169083 Caenorhabditis elegans