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Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. |
DESeq2, FDR < 0.05, fold change > 2. |
WBPaper00065975:P-body_vs_oocyte_depleted
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Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. |
DESeq2, FDR < 0.05, fold change > 2. |
WBPaper00065975:P-body_vs_WholeAnimal_depleted
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Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline. |
Log2 Fold change > 2 or <-1, p-value < 0.05. |
WBPaper00053599:female_vs_male_downregulated
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Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. |
DESeq2, fold change > 2, FDR < 0.05. |
WBPaper00066594:ilc-17.1(syb5296)_upregulated
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Transcripts that showed significantly increased expression in efa-6(tm3124) comparing to in N2 |
DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. |
WBPaper00056039:efa-6(tm3124)_upregulated
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mRNAs that showed significantly decreased expression in polysomal fractions in daf-2(e1370) comparing to in daf-2(e1370);daf-16(mu86), according to RNAseq study. |
Differentially expressed genes were determined using cuffdiff across all pairs. |
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
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mRNAs that showed significantly decreased expression in polysomal fractions in N2 comparing to in daf-2(e1370), according to RNAseq study. |
Differentially expressed genes were determined using cuffdiff across all pairs. |
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
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Transcripts that showed significantly increased expression in ptl-1(ok621) comparing to in N2 |
DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. |
WBPaper00056039:ptl-1(ok621)_upregulated
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Transcripts that showed significantly increased expression in hda-6(ok3203) comparing to in N2 |
DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. |
WBPaper00056039:hda-6(ok3203)_upregulated
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Protein coding genes with decreased expression in prg-1(wm161) comparing to in N2. |
Cuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes. |
WBPaper00045316:prg-1_downregulated_L1
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Genes that showed significantly increased expression level in rsr-2(RNAi) animals comparing to in gfp(RNAi) control, according to RNAseq analysis. |
This analysis uses Cufflinks-Cuffdiff to quantify and identify transcripts with a significant level of expression between different conditions. |
WBPaper00042477:rsr-2(RNAi)_upregulated_RNAseq
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Transgenerational starvation |
Transcripts that showed significantly altered expression in starved F4 animals of P0 animals that went through early life starvation at L1 stage, and three fed generations, comparing to in starved animals with ancestors that were not starved. |
DESeq2 |
WBPaper00065199:Transgeneration-starvation_regulated_starved
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Transcripts that showed significantly increased expression in ptrn-1(tm5597) comparing to in N2 |
DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. |
WBPaper00056039:ptrn-1(tm5597)_upregulated
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