WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219779 Gene Name  B0025.8
Sequence Name  ? B0025.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including dpy-21; daf-2; and eat-2 based on RNA-seq and microarray studies. Is affected by Tunicamycin and Tamoxifen based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 91
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Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219779

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0025.8 B0025.8 91   I: 6024143-6024233
 

Other

0 CDSs

5 RNAi Result

WormBase ID
WBRNAi00038659
WBRNAi00024349
WBRNAi00024348
WBRNAi00007812
WBRNAi00002825

5 Allele

Public Name
gk962858
gk962706
gk963902
gk964505
gk323147

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219779 6024143 6024233 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

8 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Germline-intrinsic transcripts. Comparisons were made between genotypes by subtracting the mean log value of one ratio from another, and the significance of the difference was evaluated using Student t-test for two populations. For the fem-3(gf) versus fem-1(lf) direct comparison, authors performed the same analysis, except they used a Students t-test for one population. Author chose a combination of a twofold difference with a t value exceeding 99% confidence (P < 0.01), because these criteria allowed the inclusion of essentially all genes that had previously been identified as germline-enriched in a wt/glp-4 hermaphrodite comparison. Additionally, requiring a twofold difference reduced false positives, as the number of genes with two-fold difference and a P<0.01 only included ~100 genes more than with P < 0.001, and almost all genes showed germline expression by in situ hybridization. [cgc6390]:intrinsic
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated
  Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage. DEseq2, fold change > 2 WBPaper00064505:tamoxifen_downregulated
  Transcripts that showed significantly increased expression in animals overexpressing the c-terminal fragment of FASN-1 (FASN-CTF). fold change > 2, FDR < 0.05 WBPaper00066349:fasn-1(overexpress)_downregulated
  Transcripts that showed significantly increased expression after 4 hours of treatment by 50 ub per ml tunicamycin at L4 larva stage in wild type animals. Fold change > 1.75 WBPaper00045971:tunicamycin_upregulated_control
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_25

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219779 6024143 6024233 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
91

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region