WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219663 Gene Name  anr-10
Sequence Name  ? C46H11.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by let-767 based on RNA-seq studies. Biotype  SO:0002182
Genetic Position  I :-0.422477± Length (nt)  ? 312
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219663

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C46H11.13 C46H11.13 312   I: 5046474-5046785
 

Other

0 CDSs

2 RNAi Result

WormBase ID
WBRNAi00003172
WBRNAi00029883

8 Allele

Public Name
gk962706
gk963902
gk709760
gk620874
gk900935
gk615960
gk636657
gk928091

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219663 5046474 5046785 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Starvation for 8 hours at mid-L4 larva stage. Transcripts that showed significantly decreased expression in N2 animals starved for 8 hours on unseeded plate at mid-L4 larva stage. Differential expression analysis was performed using the quasi-likelihood F-test with the generalized linear model (GLM) approach in edgeR. Fold change > 2, FDR < 0.05. WBPaper00067829:starvation_dowmregulated_N2
  Transcripts that showed significantly decreased expression in let-767(RNAi) L4 animals comparing to animals fed with empty vector. log2 fold change > 1.5 or < -1.5, p-value < 0.05 WBPaper00066679:let-767(RNAi)_downregulated
  Transcripts that showed significantly decreased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_downregulated_neural
Starvation for 8 hours at mid-L4 larva stage. Transcripts that showed significantly decreased expression in zip-2(tm4248) animals starved for 8 hours on unseeded plate at mid-L4 larva stage. Differential expression analysis was performed using the quasi-likelihood F-test with the generalized linear model (GLM) approach in edgeR. Fold change > 2, FDR < 0.05. WBPaper00067829:starvation_dowmregulated_zip-2(tm4248)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219663 5046474 5046785 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
312

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region