WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195645 Gene Name  F25F8.5
Sequence Name  ? F25F8.5 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Is affected by alh-4 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 133
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195645

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F25F8.5 F25F8.5 133   I: 4876143-4876275
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk962706
gk963902
gk964070
gk703062

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195645 4876143 4876275 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_4868281..4876142   7862 I: 4868281-4876142 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in alh-4(hj221) deletion allele comparing to in N2. N.A. WBPaper00061653:alh-4(hj221)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195645 4876143 4876275 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
133

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_4876276..4884902   8627 I: 4876276-4884902 Caenorhabditis elegans