WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198277 Gene Name  B0041.10
Sequence Name  ? B0041.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by pabp-2 and ubr-5 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 193
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198277

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0041.10 B0041.10 193   I: 4660521-4660713
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk962706
gk963902
gk964159
gk964070
WBVar01909515
WBVar02079836
WBVar02072764
WBVar00153261
tm11186

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198277 4660521 4660713 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_4660714..4660827   114 I: 4660714-4660827 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed signifcantly increased expression in pabp-2(RNAi) animals comparing to in N2 animals injected with empty vector at L1 larva stage and collected at L4 larva stage. FDR < 0.05, fold change > 2 WBPaper00067368:pabp-2(RNAi)_upregulated_N2
  Transcripts that showed signifcantly decreased expression in ubr-5(miy31);pabp-2(RNAi) comparing to in pabp-2(RNAi) animals. FDR < 0.05, fold change > 2 WBPaper00067368:ubr-5(miy31)_downregulated_pabp-2(RNAi)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198277 4660521 4660713 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
193

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_4660154..4660520   367 I: 4660154-4660520 Caenorhabditis elegans