WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10A.12a.1 Sequence Name  Y54E10A.12a.1
Length (nt)  1782   Chromosome Location  I: 3193528-3198838
Chromosome . Primary Identifier  I Chromosome Location . Start  3193528
Chromosome Location . End  3198838 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021832 syp-5 Y54E10A.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.12a Y54E10A.12a 1644   I: 3193659-3193715

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y54E10A.12a.1 3193528 3198838 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6176   188   I: 3193528-3193715 Caenorhabditis elegans
Exon6178   74   I: 3193765-3193838 Caenorhabditis elegans
Exon6180   291   I: 3194824-3195114 Caenorhabditis elegans
Exon6182   100   I: 3196113-3196212 Caenorhabditis elegans
Exon6185   477   I: 3196259-3196735 Caenorhabditis elegans
Exon6186   383   I: 3198032-3198414 Caenorhabditis elegans
Exon6187   129   I: 3198463-3198591 Caenorhabditis elegans
Exon6188   74   I: 3198649-3198722 Caenorhabditis elegans
Exon6189   66   I: 3198773-3198838 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y54E10A.12a.1 3193528 3198838 -1

1 Sequence

Length
1782

1 Sequence Ontology Term

Identifier Name Description
transcript