WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10BR.1a.1 Sequence Name  Y54E10BR.1a.1
Length (nt)  2986   Chromosome Location  I: 3059227-3069410
Chromosome . Primary Identifier  I Chromosome Location . Start  3059227
Chromosome Location . End  3069410 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10BR.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021840 pign-1 Y54E10BR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10BR.1a Y54E10BR.1a 2739   I: 3059314-3059473

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.1a.1 3059227 3069410 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5927   247   I: 3059227-3059473 Caenorhabditis elegans
Exon5928   77   I: 3059530-3059606 Caenorhabditis elegans
Exon5930   300   I: 3059658-3059957 Caenorhabditis elegans
Exon5932   148   I: 3060447-3060594 Caenorhabditis elegans
Exon5934   341   I: 3061201-3061541 Caenorhabditis elegans
Exon5936   284   I: 3062307-3062590 Caenorhabditis elegans
Exon5938   281   I: 3064672-3064952 Caenorhabditis elegans
Exon5940   115   I: 3065003-3065117 Caenorhabditis elegans
Exon5942   238   I: 3066535-3066772 Caenorhabditis elegans
Exon5944   138   I: 3066835-3066972 Caenorhabditis elegans
Exon5946   142   I: 3067738-3067879 Caenorhabditis elegans
Exon5948   293   I: 3067930-3068222 Caenorhabditis elegans
Exon5951   382   I: 3069029-3069410 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.1a.1 3059227 3069410 1

1 Sequence

Length
2986

1 Sequence Ontology Term

Identifier Name Description
transcript