WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.10c.1 Sequence Name  Y71F9B.10c.1
Length (nt)  4625   Chromosome Location  I: 2761158-2776101
Chromosome . Primary Identifier  I Chromosome Location . Start  2761158
Chromosome Location . End  2776101 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.10c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004946 sop-3 Y71F9B.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.10c Y71F9B.10c 4446   I: 2761318-2761513

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10c.1 2761158 2776101 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5205   356   I: 2761158-2761513 Caenorhabditis elegans
Exon5214   246   I: 2762147-2762392 Caenorhabditis elegans
Exon5220   957   I: 2763442-2764398 Caenorhabditis elegans
Exon5228   604   I: 2765092-2765695 Caenorhabditis elegans
Exon5234   159   I: 2765738-2765896 Caenorhabditis elegans
Exon5240   660   I: 2767170-2767829 Caenorhabditis elegans
Exon5246   224   I: 2768648-2768871 Caenorhabditis elegans
Exon5252   112   I: 2769761-2769872 Caenorhabditis elegans
Exon5260   570   I: 2770801-2771370 Caenorhabditis elegans
Exon5264   215   I: 2772770-2772984 Caenorhabditis elegans
Exon5270   143   I: 2775424-2775566 Caenorhabditis elegans
Exon5274   88   I: 2775614-2775701 Caenorhabditis elegans
Exon5278   134   I: 2775761-2775894 Caenorhabditis elegans
Exon5282   157   I: 2775945-2776101 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10c.1 2761158 2776101 -1

1 Sequence

Length
4625

1 Sequence Ontology Term

Identifier Name Description
transcript