WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023198 Gene Name  Y92H12A.t1
Sequence Name  ? Y92H12A.t1 Organism  Caenorhabditis elegans
Automated Description  Is affected by atracurium based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 73
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SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023198

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y92H12A.t1 Y92H12A.t1 73   I: 1575720-1575792
 

Other

0 CDSs

14 RNAi Result

WormBase ID
WBRNAi00062603
WBRNAi00062604
WBRNAi00062623
WBRNAi00065785
WBRNAi00062624
WBRNAi00062625
WBRNAi00062626
WBRNAi00062627
WBRNAi00062599
WBRNAi00062600
WBRNAi00062601
WBRNAi00062602
WBRNAi00022856
WBRNAi00065056

8 Allele

Public Name
gk963902
gk963630
gk963701
cj293
gk962913
gk962914
gk312747
lq185

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00023198 1575720 1575792 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression after 24 hours of treatment by 50 uM atracurium. Differential expression was assessed using an empirical Bayes moderated t test within limma's linear model framework including the precision weights estimated by voom. Resulting p-values were corrected for multiple testing using the Benjamini-Hochberg false discovery rate. Fold change > 2, p-value < 0.05. WBPaper00061636:atracurium_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00023198 1575720 1575792 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
73

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region