WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1BL.2b.1 Sequence Name  Y48G1BL.2b.1
Length (nt)  5106   Chromosome Location  I: 192695-207952
Chromosome . Primary Identifier  I Chromosome Location . Start  192695
Chromosome Location . End  207952 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1BL.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1BL.2b Y48G1BL.2b 5106   I: 192695-193095

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y48G1BL.2b.1 192695 207952 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon494   401   I: 192695-193095 Caenorhabditis elegans
Exon496   346   I: 193589-193934 Caenorhabditis elegans
Exon498   89   I: 194710-194798 Caenorhabditis elegans
Exon500   196   I: 195020-195215 Caenorhabditis elegans
Exon502   167   I: 195357-195523 Caenorhabditis elegans
Exon504   251   I: 196083-196333 Caenorhabditis elegans
Exon506   449   I: 197205-197653 Caenorhabditis elegans
Exon508   115   I: 197959-198073 Caenorhabditis elegans
Exon510   457   I: 200047-200503 Caenorhabditis elegans
Exon512   391   I: 201303-201693 Caenorhabditis elegans
Exon514   324   I: 202124-202447 Caenorhabditis elegans
Exon516   292   I: 203067-203358 Caenorhabditis elegans
Exon518   424   I: 204262-204685 Caenorhabditis elegans
Exon520   145   I: 205074-205218 Caenorhabditis elegans
Exon522   298   I: 205300-205597 Caenorhabditis elegans
Exon524   172   I: 206420-206591 Caenorhabditis elegans
Exon526   89   I: 206693-206781 Caenorhabditis elegans
Exon528   251   I: 207061-207311 Caenorhabditis elegans
Exon529   249   I: 207704-207952 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y48G1BL.2b.1 192695 207952 1

1 Sequence

Length
5106

1 Sequence Ontology Term

Identifier Name Description
transcript