Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:T12A2.21.1 | T12A2.21.1 |
2087
 |
III: 6233503-6236749 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:T12A2.21 | T12A2.21 |
1815
|
III: 6233718-6233753 |
48 Allele
| Public Name |
|---|
| gk964518 |
| gk176214 |
| gk176215 |
| gk176216 |
| gk176217 |
| gk176218 |
| gk176219 |
| gk176220 |
| gk176221 |
| gk176222 |
| WBVar01264272 |
| WBVar01264276 |
| WBVar01264275 |
| tm10085 |
| WBVar01722597 |
| WBVar01771109 |
| WBVar00602666 |
| ttTi45803 |
| WBVar01566600 |
| WBVar01566601 |
| WBVar01566602 |
| WBVar01566599 |
| WBVar01396881 |
| WBVar00062077 |
| gk595993 |
| gk452875 |
| gk418785 |
| gk542385 |
| gk543719 |
| gk921337 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00305999 | 6233503 | 6236749 | -1 |
4 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) | |
| Panther orthologue and paralogue predictions |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_6230971..6233502 | 2532 | III: 6230971-6233502 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genome-wide analysis of developmental and sex-regulated gene expression profile. | self-organizing map | cgc4489_group_18 | |
| Proteins identified in extracellular vesicle. | N.A. | WBPaper00062669:extracellular-vesicle_protein | |
| Diet: supplemented with milk fat-containing protein powder from L1 to day 2 adult stage. | Transcripts that showed significantly decreased expression in N2 animals fed with OP50 supplemented with milk fat-containing protein powder from L1 to day 2 adult stage. | Differential expression analysis between two conditions (three biological replicates per condition) was performed using DESeq2. Genes with p-value < 0.05 and Fold Change > 2 found by DESeq2 were assigned as differentially expressed. | WBPaper00067530:Milk-protein_downregulated |
8 GO Annotation
| Annotation Extension | Qualifier |
|---|---|
| part_of | |
| part_of | |
| part_of | |
| involved_in | |
| located_in | |
| located_in | |
| involved_in | |
| involved_in |
8 Ontology Annotations
| Annotation Extension | Qualifier |
|---|---|
| part_of | |
| part_of | |
| part_of | |
| involved_in | |
| located_in | |
| located_in | |
| involved_in | |
| involved_in |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_6236750..6237257 | 508 | III: 6236750-6237257 | Caenorhabditis elegans |
