WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305069 Gene Name  Y80D4G.2
Sequence Name  ? Y80D4G.2 Organism  Caenorhabditis elegans
Automated Description  Predicted to be located in membrane. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 898
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305069

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y80D4G.2.1 Y80D4G.2.1 527   III: 7593685-7594582
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y80D4G.2 Y80D4G.2 330   III: 7593852-7594003

0 RNAi Result

29 Allele

Public Name
gk964518
gk963887
WBVar02120684
WBVar02123058
WBVar02121593
WBVar02124474
WBVar02124350
WBVar02122239
WBVar02121413
WBVar02123995
WBVar01541838
WBVar01657050
gk958284
gk962241
WBVar02103260
WBVar01995526
WBVar02121594
gk178570
gk178569
WBVar01645483
WBVar01645484
gk178572
gk178571
gk452889
gk383284
gk731526
WBVar02053363
gk714227
gk608550

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305069 7593685 7594582 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_7593336..7593684   349 III: 7593336-7593684 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression after exposure to Polystyrene-nanoplastics (PS-NPs) from L1 to day 1 adult. EdgeR, fold change > 2, FDR < 0.05. WBPaper00068118:Polystyrene-nanoplastics_downregulated

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305069 7593685 7594582 -1

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

1 Sequence

Length
898

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_7594583..7601469   6887 III: 7594583-7601469 Caenorhabditis elegans