Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y92H12BL.7.1 | Y92H12BL.7.1 |
528
 |
I: 1376942-1379341 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y92H12BL.7 | Y92H12BL.7 |
528
|
I: 1376942-1377359 |
81 Allele
| Public Name |
|---|
| gk963902 |
| otn10591 |
| gk963630 |
| gk963701 |
| WBVar01711576 |
| WBVar01375933 |
| WBVar01545745 |
| WBVar01545746 |
| WBVar01545747 |
| WBVar01545748 |
| WBVar01376044 |
| WBVar01376156 |
| WBVar01378933 |
| WBVar01655018 |
| WBVar02028190 |
| WBVar01930683 |
| WBVar01930687 |
| WBVar01930685 |
| WBVar01930684 |
| WBVar00148644 |
| WBVar00148645 |
| WBVar00148646 |
| WBVar00148647 |
| WBVar00148643 |
| WBVar00533439 |
| WBVar01277635 |
| WBVar01277636 |
| WBVar01277637 |
| WBVar01277638 |
| WBVar01277639 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00305050 | 1376942 | 1379341 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_1376410..1376941 | 532 | I: 1376410-1376941 | Caenorhabditis elegans |
6 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes expressed in N2. | Expressed transcripts were identified on the basis of a Present call in 3 out of 4 N2 experiments as determined by Affymetrix MAS 5.0. | WBPaper00025141:N2_Expressed_Genes | |
| Proteins detected in intestine from single-worm studies. | N.A. | WBPaper00066880:intestine_expressed | |
| Genes with variation in expression level across genotypes (AB2, CB4856, RC301, CB4857, N2, HC445). | two-way ANOVA | WBPaper00041174:genotypic | |
| Genes up regulated in the absence of TDP-1, when the threshold was set at a fold change (FC) of 1.2. | The management and statistical analysis of the microarray data were performed using the Partek Genomic Suite (Partek, Missouri) and Spotfire DecisionSite software (TIBCO, California). | WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2 | |
| Genes with significant variation in expression level only across genotypes(AB2, CB4856, RC301, CB4857, N2, HC445), but not environments (control, 25C, High-pH-Salt, Liquid, infection). | two-way ANOVA | WBPaper00041174:genotypic_prime | |
| Transcripts that showed significantly decreased expression after synchronized L4 staged worms were treated with 10 mM caffeine at 25C for 72 hours. | DESeq2 | WBPaper00067717:caffeine_downregulated |
