Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:ZC53.22.1 | ZC53.22.1 |
653
 |
X: 1921572-1922394 |
| Transcript:ZC53.22.2 | ZC53.22.2 |
581
|
X: 1921580-1922381 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:ZC53.22 | ZC53.22 |
165
|
X: 1922032-1922055 |
23 Allele
| Public Name |
|---|
| gk963725 |
| gk963864 |
| gk964444 |
| gk964445 |
| gk963977 |
| WBVar02122280 |
| WBVar02124291 |
| WBVar01600885 |
| WBVar01600886 |
| WBVar00075633 |
| WBVar00075634 |
| WBVar01979539 |
| WBVar01987240 |
| gk334020 |
| gk718616 |
| gk740399 |
| gk544777 |
| gk870602 |
| gk870601 |
| WBVar02124292 |
| WBVar02009027 |
| WBVar01897589 |
| gk272430 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00304790 | 1921572 | 1922394 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_1919756..1921571 | 1816 | X: 1919756-1921571 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in N2 comparing to in skn-1 gain of function allele lax188 animals | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00067765:skn-1(lax188)_upregulated_N2 | |
| Transcripts that showed significantly decreased expression in bcf-1(ylf1) comparing to in N2 adult animals. | DESeq2 | WBPaper00064933:bcf-1(ylf1)_downregulated_transcript | |
| Transcripts enriched in Rectal_gland according to single cell RNAseq. | Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. | WBPaper00061651:Rectal_gland_enriched | |
| Transcripts that showed significantly increased expression in sdc-3(ubs20) comparing to in control animals. | DESeq2 v.1.34, fold change > 2, FDR < 0.05. | WBPaper00067078:sdc-3(ubs20)_upregulated | |
| Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage. | DEseq2, fold change > 2 | WBPaper00064505:tamoxifen_downregulated |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_1922395..1923722 | 1328 | X: 1922395-1923722 | Caenorhabditis elegans |
