Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F39B3.7.1 | F39B3.7.1 |
418
 |
X: 17566648-17567478 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F39B3.7 | F39B3.7 |
399
|
X: 17566667-17566821 |
14 Allele
| Public Name |
|---|
| gk964260 |
| gk963810 |
| gk963581 |
| gk964446 |
| WBVar02028004 |
| WBVar02073595 |
| gk390440 |
| gk738310 |
| gk308262 |
| gk308263 |
| gk308260 |
| gk308261 |
| WBVar00087714 |
| WBVar01801062 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00304237 | 17566648 | 17567478 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_17566023..17566647 | 625 | X: 17566023-17566647 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. | DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. | WBPaper00060811:L1_vs_adult_upregulated_neural | |
| Transcripts that showed significantly decreased expression in tmc-1(rg1003) comparing to in N2. | DESeq2. The genes with a fold change >= 2 and a false discovery rate (FDR) < 0.05 in a comparison were identified as significant DEGs. | WBPaper00065746:tmc-1(rg1003)_downregulated | |
| Transcripts enriched in VB1 according to single cell RNAseq. | Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. | WBPaper00066550:VB1_enriched | |
| heat-killed OP50 | Transcripts that showed significantly decreased expression in N2 L1 animals fed with heat-killed OP50 for 4 hours comparing to those animals fed with OP50. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00067214:Heat-Killed-OP50_downregulated |
| Transcripts enriched in VD3_7 according to single cell RNAseq. | Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. | WBPaper00066550:VD3_7_enriched |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_17567479..17567564 | 86 | X: 17567479-17567564 | Caenorhabditis elegans |
