WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00303425 Gene Name  R02E12.12
Sequence Name  ? R02E12.12 Organism  Caenorhabditis elegans
Automated Description  Predicted to enable zinc ion binding activity. Is an ortholog of human CHFR (checkpoint with forkhead and ring finger domains). Biotype  SO:0001217
Genetic Position  X:± Length (nt)  ? 1717
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00303425

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R02E12.12.1 R02E12.12.1 866   X: 4003520-4005236
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R02E12.12 R02E12.12 684   X: 4003532-4003720

0 RNAi Result

34 Allele

Public Name
gk963725
gk964260
gk964060
WBVar02122481
gk951032
WBVar01830164
tm7732
WBVar02122480
WBVar01901549
WBVar02044627
WBVar02044626
gk593578
gk445741
gk896386
gk765552
gk554002
gk668612
gk900784
gk326430
gk800341
gk551345
gk510909
gk684964
gk816510
gk277186
gk277185
WBVar01468438
WBVar01468439
WBVar01814506
WBVar01814505

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00303425 4003520 4005236 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_4005237..4005313   77 X: 4005237-4005313 Caenorhabditis elegans

16 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_upregulated
  Transcripts that showed significantly decreased expression in N2 comparing to in skn-1 gain of function allele lax188 animals DESeq2, fold change > 2, FDR < 0.05. WBPaper00067765:skn-1(lax188)_upregulated_N2
  Transcripts that showed significantly increased expression in fmi-1(rh308) young adults comparing to in N2 animals. fold change > 2, p-value < 0.05 WBPaper00066618:fmi-1(rh308)_upregulated
  Single-cell RNA-Seq cell group 51_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:51_1
  Single-cell RNA-Seq cell group 65_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:65_0
  Single-cell RNA-Seq cell group 138_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:138_0
  Single-cell RNA-Seq cell group 116_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:116_0
  Single-cell RNA-Seq cell group 80_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:80_0
  Single-cell RNA-Seq cell group 53_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:53_0
  Single-cell RNA-Seq cell group 58_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:58_0
  Single-cell RNA-Seq cell group 58_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:58_1
  Single-cell RNA-Seq cell group 46_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:46_0
  Single-cell RNA-Seq cell group 92_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:92_0
  Single-cell RNA-Seq cell group 119_0 expressed in mesoderm. scVI 0.6.0 WBPaper00065841:119_0
  Transcripts enriched in PVN according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:PVN_enriched

0 Expression Patterns

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00303425 4003520 4005236 1

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

1 Sequence

Length
1717

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_3999342..4003519   4178 X: 3999342-4003519 Caenorhabditis elegans