Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y95D11A.5.1 | Y95D11A.5.1 |
657
 |
I: 10952934-10955204 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y95D11A.5 | Y95D11A.5 |
657
|
I: 10952934-10953182 |
48 Allele
| Public Name |
|---|
| gk962858 |
| gk962706 |
| gk963849 |
| gk962634 |
| WBVar01762365 |
| WBVar00100473 |
| WBVar02033025 |
| WBVar00214421 |
| WBVar00214422 |
| WBVar00214424 |
| WBVar01343889 |
| WBVar00267283 |
| WBVar00267284 |
| WBVar00267285 |
| WBVar00267286 |
| WBVar01284175 |
| WBVar01284177 |
| WBVar01284176 |
| WBVar01284179 |
| WBVar01284178 |
| WBVar01284180 |
| WBVar01889943 |
| WBVar01889944 |
| gk827768 |
| gk754804 |
| WBVar02116707 |
| gk718823 |
| gk820932 |
| gk778522 |
| gk349729 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00284854 | 10952934 | 10955204 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_10945894..10952933 | 7040 | I: 10945894-10952933 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in ubc-9(ne4833[ubc-9(G56R)] in gonads dissected from 1-day old adult animals. | Salmon was used to map the mRNA-seq reads with the worm database WS268, and its output files were imported to DESeq2 in R. The differentially expressed genes were filtered by fold change more than 2 and adjusted p-value < 0.05. The scatter plots were generated by the plot function in R. | WBPaper00061479:ubc-9(ne4833)_upregulated | |
| Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066594:ilc-17.1(syb5296)_upregulated | |
| Transcripts that showed significantly increased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals. | Genes exhibiting at least two-fold change were considered differentially expressed. | WBPaper00061439:unc-30(ok613)_upregulated | |
| Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum | Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. | GFold3, logFC < -1 or > 1. | WBPaper00066703:L.plantarum-pdxH_downregulated |
| Transcripts that showed significantly increased expression in nhr-8(hd117) comparing to in N2. | Differentially expressed genes were identified using Sleuth (version 0.30.0). | WBPaper00062446:nhr-8(hd117)_upregulated |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrI_10955205..10958296 | 3092 | I: 10955205-10958296 | Caenorhabditis elegans |
