WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00283745 Gene Name  Ppa-tph-1
Sequence Name  ? PPA45376 Organism  Pristionchus pacificus
Automated Description  Predicted to enable iron ion binding activity and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen. Predicted to be involved in aromatic amino acid metabolic process. Expressed in ADFL; ADFR; NSML; and NSMR. Is an ortholog of C. elegans tph-1. In C. elegans, tph-1 is involved in several processes, including determination of adult lifespan; locomotory exploration behavior; and positive regulation of transforming growth factor beta receptor signaling pathway. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA45376.1 PPA45376.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA45376 PPA45376   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr14429 The Ppa-tph-1p::RFP reporter construct was expressed in a subset of neurons in the head region. We performed immunostaining with anti-serotonin and anti-RFP antibodies and found that RFP is expressed in NSM and ADF neurons, but not in I1 and HSN neurons.  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region