Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F22F7.12.1 | F22F7.12.1 |
444
 |
V: 2144020-2144508 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F22F7.12 | F22F7.12 |
444
|
V: 2144020-2144111 |
17 Allele
| Public Name |
|---|
| gk963301 |
| gk963591 |
| gk963553 |
| gk964259 |
| gk963850 |
| gk963027 |
| gk963604 |
| WBVar00204002 |
| WBVar00204003 |
| tm10806 |
| gk886712 |
| gk862800 |
| gk717517 |
| gk354432 |
| gk380001 |
| gk574011 |
| h14594 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00268198 | 2144020 | 2144508 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_2140043..2144019 | 3977 | V: 2140043-2144019 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. | N.A. | WBPaper00026929:sir-2.1_overexpression_regulated | |
| Germline-enriched and sex-biased expression profile cluster B. | hierarchical clustering | [cgc6390]:Cluster_B | |
| Genes with expression level regulated by genotype (N2 vs CB4856) at Old adults stage (214 hours at 24 centigrade). | Authors permuted transcript values and used a genome-wide threshold of log10 P-value = 2, which resembles a false discovery rate (FDR) of 0.0136. | WBPaper00040858:eQTL_regulated_old | |
| Bacteria infection: Enterococcus faecalis | Genes down-regulated in animals infected with Enterococcus faecalis compared to the E. coli OP50 control after 24h of infection. | MAANOVA and BRB-Array-Tools. | WBPaper00030985:Enterococcus_faecalis_downregulated |
| Bacteria infection: Erwinia carotovora | Genes up-regulated in animals infected with Erwinia carotovora compared to the E. coli OP50 control after 24h of infection. | MAANOVA and BRB-Array-Tools. | WBPaper00030985:Erwinia_carotovora_upregulated |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_2144509..2145484 | 976 | V: 2144509-2145484 | Caenorhabditis elegans |
