WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00263430 Gene Name  SRAE_2000320900
Sequence Name  ? SRAE_2000320900 Organism  Strongyloides ratti
Automated Description  Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and transmembrane transporter activity. Predicted to be involved in arginyl-tRNA aminoacylation; peptide transport; and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans haf-4. In C. elegans, haf-4 is involved in lipid metabolic process and lysosomal transport. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_2000320900.1 SRAE_2000320900.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_2000320900 SRAE_2000320900   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to parasitic female stage (collected from S. ratti-infected rats). Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:down_infective-L3_vs_parasitic_mRNA
parasitic vs free-living. Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to free living female stage. Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:down_infective-L3_vs_free-living_mRNA

0 Expression Patterns

12 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  enables
  involved_in
  involved_in
  located_in
  enables
  enables
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

12 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  enables
  involved_in
  involved_in
  located_in
  enables
  enables
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region