WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00262314 Gene Name  SRAE_2000210700
Sequence Name  ? SRAE_2000210700 Organism  Strongyloides ratti
Automated Description  Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isoprenoid biosynthetic process and signal peptide processing. Predicted to be located in membrane. Predicted to be part of signal peptidase complex. Is an ortholog of C. elegans idi-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_2000210700.1 SRAE_2000210700.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_2000210700 SRAE_2000210700   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Proteins that showed significantly increased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage. Significant differences were analyzed statistically by ANOVA. Q-values are adjusted P values and were calculated by Progenesis based on an optimized false discovery (FDR) approach. A protein was considered to be differentially expressed if q < 0.05. WBPaper00050919:up_parasitic_vs_free-living_protein

0 Expression Patterns

5 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  enables
  involved_in
  part_of

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  enables
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region