WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00258184 Gene Name  SRAE_1000157600
Sequence Name  ? SRAE_1000157600 Organism  Strongyloides ratti
Automated Description  Predicted to enable RNA binding activity and translation initiation factor activity. Predicted to be involved in translational initiation. Is an ortholog of C. elegans ife-2. In C. elegans, ife-2 is involved in several processes, including determination of adult lifespan; negative regulation of response to oxidative stress; and positive regulation of translation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_1000157600.1 SRAE_1000157600.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_1000157600 SRAE_1000157600   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Proteins that showed significantly increased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage. Significant differences were analyzed statistically by ANOVA. Q-values are adjusted P values and were calculated by Progenesis based on an optimized false discovery (FDR) approach. A protein was considered to be differentially expressed if q < 0.05. WBPaper00050919:up_parasitic_vs_free-living_protein

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region