WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00228562 Gene Name  Bma-cht-1.1
Sequence Name  ? Bm8301 Organism  Brugia malayi
Automated Description  Predicted to enable chitin binding activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in extracellular region. Is an ortholog of C. elegans cht-1. In C. elegans, cht-1 is involved in chitin catabolic process and response to fungus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm8301a.1 Bm8301a.1   [unknown]
Transcript:Bm8301c.1 Bm8301c.1   [unknown]
Transcript:Bm8301b.1 Bm8301b.1   [unknown]
Transcript:Bm8301e.1 Bm8301e.1   [unknown]
Transcript:Bm8301d.1 Bm8301d.1   [unknown]
Transcript:Bm8301f.1 Bm8301f.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm8301a Bm8301a   [unknown]
CDS:Bm8301b Bm8301b   [unknown]
CDS:Bm8301e Bm8301e   [unknown]
CDS:Bm8301f Bm8301f   [unknown]
CDS:Bm8301c Bm8301c   [unknown]
CDS:Bm8301d Bm8301d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly higher expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Upregulated
  Proteins secreted by B.malayi at L3 larva stage, according to LC-MS-MS. N.A. WBPaper00050454:Secretome_protein
  Transcripts that showed significantly decreased expression after 48 hours of 100nM ivermectin exposure. Differential gene expression analysis between time points and drug concentrations was realized in edgeR (version 3.10.5) through the web interface provided by NetworkAnalyst. Significance was set as an experiment-wide false discovery rate (FDR) <0.20 (after the Benjamini-Hochberg method). WBPaper00049974:ivermectin_100nM_48h_downregulated
  Transcripts that showed significantly higher expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Upregulated

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region