WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00227423 Gene Name  Bma-gcn-2
Sequence Name  ? Bm7162 Organism  Brugia malayi
Automated Description  Predicted to enable ATP binding activity and eukaryotic translation initiation factor 2alpha kinase activity. Predicted to be involved in DNA damage checkpoint signaling and regulation of translational initiation by eIF2 alpha phosphorylation. Is an ortholog of C. elegans gcn-2. In C. elegans, gcn-2 is involved in several processes, including determination of adult lifespan; positive regulation of protein modification process; and response to stress. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm7162b.1 Bm7162b.1   [unknown]
Transcript:Bm7162a.1 Bm7162a.1   [unknown]
Transcript:Bm7162e.1 Bm7162e.1   [unknown]
Transcript:Bm7162d.1 Bm7162d.1   [unknown]
Transcript:Bm7162c.1 Bm7162c.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm7162d Bm7162d   [unknown]
CDS:Bm7162c Bm7162c   [unknown]
CDS:Bm7162b Bm7162b   [unknown]
CDS:Bm7162a Bm7162a   [unknown]
CDS:Bm7162e Bm7162e   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M30
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 42 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M42

0 Expression Patterns

6 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region