WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00226747 Gene Name  Bma-xrn-1
Sequence Name  ? Bm6486 Organism  Brugia malayi
Automated Description  Predicted to enable 5'-3' exonuclease activity and nucleic acid binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Is an ortholog of C. elegans xrn-1. In C. elegans, xrn-1 is involved in determination of adult lifespan and negative regulation of cytoplasmic mRNA processing body assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm6486d.1 Bm6486d.1   [unknown]
Transcript:Bm6486c.1 Bm6486c.1   [unknown]
Transcript:Bm6486b.1 Bm6486b.1   [unknown]
Transcript:Bm6486a.1 Bm6486a.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm6486c Bm6486c   [unknown]
CDS:Bm6486d Bm6486d   [unknown]
CDS:Bm6486a Bm6486a   [unknown]
CDS:Bm6486b Bm6486b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region