WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00225517 Gene Name  Bma-npp-19
Sequence Name  ? Bm5256 Organism  Brugia malayi
Automated Description  Predicted to enable nucleic acid binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport. Predicted to be located in nuclear membrane. Is an ortholog of C. elegans npp-19. In C. elegans, npp-19 is involved in embryo development; nucleus organization; and regulation of exit from mitosis. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

11 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm5256a.1 Bm5256a.1   [unknown]
Transcript:Bm5256c.1 Bm5256c.1   [unknown]
Transcript:Bm5256b.3 Bm5256b.3   [unknown]
Transcript:Bm5256b.1 Bm5256b.1   [unknown]
Transcript:Bm5256b.2 Bm5256b.2   [unknown]
Transcript:Bm5256e.1 Bm5256e.1   [unknown]
Transcript:Bm5256d.1 Bm5256d.1   [unknown]
Transcript:Bm5256f.4 Bm5256f.4   [unknown]
Transcript:Bm5256f.3 Bm5256f.3   [unknown]
Transcript:Bm5256f.2 Bm5256f.2   [unknown]
Transcript:Bm5256f.1 Bm5256f.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm5256f Bm5256f   [unknown]
CDS:Bm5256e Bm5256e   [unknown]
CDS:Bm5256d Bm5256d   [unknown]
CDS:Bm5256c Bm5256c   [unknown]
CDS:Bm5256b Bm5256b   [unknown]
CDS:Bm5256a Bm5256a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly lower expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Downregulated
  Transcripts that showed significantly higher expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Upregulated

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region