WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00202874 Gene Name  PPA30006
Sequence Name  ? PPA30006 Organism  Pristionchus pacificus
Automated Description  Predicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to be involved in DNA-templated transcription initiation; SNARE complex disassembly; and mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrion. Predicted to be part of RNA polymerase complex. Is an ortholog of C. elegans nsf-1. In C. elegans, nsf-1 is involved in IRE1-mediated unfolded protein response. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA30006.1 PPA30006.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA30006 PPA30006   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Pristionchus pacificus genes down regulated in the dauer versus dauer-exit worms. The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. WBPaper00041207:PP_dauer_down

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region