Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:R02F11.10.1 | R02F11.10.1 |
540
 |
V: 4789123-4790045 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:R02F11.10 | R02F11.10 |
540
|
V: 4789123-4789271 |
24 Allele
| Public Name |
|---|
| gk963301 |
| gk963591 |
| gk963553 |
| gk964259 |
| gk964351 |
| gk963850 |
| WBVar01861593 |
| gk471853 |
| gk516436 |
| gk582561 |
| gk673541 |
| gk395970 |
| gk736014 |
| gk617920 |
| gk516437 |
| WBVar01650804 |
| WBVar02077865 |
| WBVar02121263 |
| ttTi45797 |
| ttTi45799 |
| WBVar01997686 |
| tm11512 |
| gk233719 |
| gk233718 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00202497 | 4789123 | 4790045 | 1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_4790046..4790667 | 622 | V: 4790046-4790667 | Caenorhabditis elegans |
6 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Single-cell RNA-Seq cell group 71_0 expressed in neuron. | scVI 0.6.0 | WBPaper00065841:71_0 | |
| Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. | DESEQ2, fold change > 2 and FDR < 0.01. | WBPaper00062103:neuron_enriched | |
| Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. | N.A. | WBPaper00026929:sir-2.1_overexpression_regulated | |
| Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. | N.A. | WBPaper00026929:Resveratrol_regulated_daf-16 | |
| Genome-wide analysis of developmental and sex-regulated gene expression profile. | self-organizing map | cgc4489_group_15 | |
| Transcripts that showed more than 4 fold of expression in CB4856 comparing to in N2 animals. | DESeq2, fold change > 4. | WBPaper00053909:N2_vs_CB4856_downregulated |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1154856 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_4788449..4789122 | 674 | V: 4788449-4789122 | Caenorhabditis elegans |
