Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:M03C11.9.1 | M03C11.9.1 |
255
 |
III: 10388632-10391728 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:M03C11.9 | M03C11.9 |
147
|
III: 10388632-10388733 |
56 Allele
| Public Name |
|---|
| gk964518 |
| gk963887 |
| WBVar02019107 |
| WBVar02019108 |
| WBVar00178559 |
| WBVar00178560 |
| snx2761 |
| WBVar01939735 |
| ttTi4112 |
| gk662233 |
| gk880920 |
| gk780384 |
| gk658455 |
| gk320369 |
| gk623311 |
| gk927604 |
| gk348800 |
| gk672928 |
| gk555609 |
| snx4601 |
| gk668289 |
| WBVar02077743 |
| gk961276 |
| gk752009 |
| gk578988 |
| gk883861 |
| snx902 |
| gk366797 |
| gk371191 |
| gk2374 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00194868 | 10388632 | 10391728 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_10386577..10388631 | 2055 | III: 10386577-10388631 | Caenorhabditis elegans |
7 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in csr-1a(tor159) comparing to in N2 at 25C. | DESeq2, fold change > 2, p-value < 0.05. | WBPaper00061753:csr-1(tor159)_upregulated_25C | |
| Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:daf-2(e1370)_upregulated_neuron | |
| Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:daf-16(mu86)_upregulated_neuron | |
| Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_downregulated_neuron | |
| Single-cell RNA-Seq cell group 142_0 expressed in neuron. | scVI 0.6.0 | WBPaper00065841:142_0 | |
| Transcripts that showed significantly increased expression in alh-4(hj221) deletion allele comparing to in N2. | N.A. | WBPaper00061653:alh-4(hj221)_upregulated | |
| Transcripts that showed significantly decreased expression in met-2(n4256) L1 animals comparing to in N2 control. | DeSeq2 (v.2.11.40.2), p < 0.05. | WBPaper00060886:met-2(n4256)_downregulated |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1154559 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_10391729..10393349 | 1621 | III: 10391729-10393349 | Caenorhabditis elegans |
