WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00134388 Gene Name  Cjp-cku-80
Sequence Name  ? CJA15184 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable damaged DNA binding activity and telomeric DNA binding activity. Predicted to be involved in DNA recombination; double-strand break repair via nonhomologous end joining; and telomere maintenance. Predicted to be located in nucleus. Predicted to be part of Ku70:Ku80 complex. Is an ortholog of C. elegans cku-80. In C. elegans, cku-80 is involved in DNA repair. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA15184.1 CJA15184.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA15184 CJA15184   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-cku-80, ACTGGTGGAGTTCTCAAGTTGATACAGTTCACGAAACGAGCTAATGTGGGTTTTTATTAA, WBGene00134388   Expr1077625 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA27313, TTGAAATGGACGAAGACGCACAACTGGTGTGCTCGAAAATGCTGCAGATGATATCCAGCA, WBGene00182885   Expr1090691 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA25404, ATTCACATTTCACGCAAAGTCTCACGTGCAATTGGTAGCTCTTCTACCGCACAAAGACGA, WBGene00180976   Expr1082383 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  involved_in
  involved_in
  part_of
  located_in
  enables
  enables

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  involved_in
  involved_in
  part_of
  located_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region